Detailed information of SNP:
|
SNP ID:
sf0715472404(Gbrowse)
Chromosome: chr07 Position: 15472404 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 98.47% | 1.53% |
| All Indica | 787 | 99.36% | 0.64% |
| All Japonica | 467 | 96.79% | 3.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 99.46% | 0.54% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 317 | 95.58% | 4.42% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715472404 | G->A | LOC_Os07g26780(LOC_Os07g26780.1) | Non-Synonymous SNP |