Detailed information of SNP:
|
SNP ID:
sf0715480034(Gbrowse)
Chromosome: chr07 Position: 15480034 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 96.19% | 3.81% |
| All Indica | 774 | 93.41% | 6.59% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 97.81% | 2.19% |
| Indica II | 203 | 88.67% | 11.33% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715480034 | C->T | INTERGENIC | None |