Detailed information of SNP:
|
SNP ID:
sf0715480037(Gbrowse)
Chromosome: chr07 Position: 15480037 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 96.01% | 3.99% |
| All Indica | 790 | 94.81% | 5.19% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 204 | 85.29% | 14.71% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715480037 | T->C | INTERGENIC | None |