Detailed information of SNP:
|
SNP ID:
sf0715488462(Gbrowse)
Chromosome: chr07 Position: 15488462 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 82.53% | 17.47% |
| All Indica | 792 | 73.61% | 26.39% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 371 | 68.73% | 31.27% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 209 | 63.16% | 36.84% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715488462 | C->T | LOC_Os07g26800(LOC_Os07g26800.1) | SNPs that introduce stop codons |