Detailed information of SNP:
|
SNP ID:
sf0715494356(Gbrowse)
Chromosome: chr07 Position: 15494356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 98.58% | 1.42% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 96.13% | 3.87% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 94.53% | 5.47% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715494356 | C->T | LOC_Os07g26810(LOC_Os07g26810.1) | Non-Synonymous SNP |