Detailed information of SNP:
|
SNP ID:
sf0715495685(Gbrowse)
Chromosome: chr07 Position: 15495685 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 96.46% | 3.54% |
| All Indica | 794 | 96.22% | 3.78% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715495685 | G->A | INTERGENIC | None |