Detailed information of SNP:
|
SNP ID:
sf0715495756(Gbrowse)
Chromosome: chr07 Position: 15495756 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 98.23% | 1.77% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715495756 | G->A | INTERGENIC | None |