Detailed information of SNP:
|
SNP ID:
sf0715501735(Gbrowse)
Chromosome: chr07 Position: 15501735 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 51.35% | 48.65% |
| All Indica | 748 | 27.14% | 72.86% |
| All Japonica | 470 | 92.77% | 7.23% |
| Aus | 61 | 22.95% | 77.05% |
| Indica I | 352 | 29.55% | 70.45% |
| Indica II | 198 | 19.19% | 80.81% |
| Indica Intermediate | 198 | 30.81% | 69.19% |
| Temperate Japonica | 328 | 97.87% | 2.13% |
| Tropical Japonica | 86 | 75.58% | 24.42% |
| Japonica Intermediate | 56 | 89.29% | 10.71% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715501735 | T->A | INTERGENIC | None |