Detailed information of SNP:
|
SNP ID:
sf0715505977(Gbrowse)
Chromosome: chr07 Position: 15505977 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 89.55% | 10.45% |
| All Indica | 742 | 83.96% | 16.04% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 57 | 70.18% | 29.82% |
| Indica I | 342 | 80.70% | 19.30% |
| Indica II | 198 | 93.43% | 6.57% |
| Indica Intermediate | 202 | 80.20% | 19.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715505977 | G->A | INTERGENIC | None |