Detailed information of SNP:
|
SNP ID:
sf0715511645(Gbrowse)
Chromosome: chr07 Position: 15511645 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1315 | 73.23% | 26.77% |
| All Indica | 795 | 95.47% | 4.53% |
| All Japonica | 397 | 30.23% | 69.77% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 238 | 42.86% | 57.14% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715511645 | C->A | INTERGENIC | None |