Detailed information of SNP:
|
SNP ID:
sf0715537981(Gbrowse)
Chromosome: chr07 Position: 15537981 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.01% | 47.99% |
| All Indica | 799 | 18.27% | 81.73% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 14.67% | 85.33% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715537981 | G->A | INTERGENIC | None |