Detailed information of SNP:
|
SNP ID:
sf0715543963(Gbrowse)
Chromosome: chr07 Position: 15543963 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.41% | 48.59% |
| All Indica | 799 | 17.40% | 82.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 13.07% | 86.93% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715543963 | C->T | LOC_Os07g26860(LOC_Os07g26860.1) | Synonymous |