Detailed information of SNP:
|
SNP ID:
sf0715575545(Gbrowse)
Chromosome: chr07 Position: 15575545 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.98% | 28.02% |
| All Indica | 797 | 86.57% | 13.43% |
| All Japonica | 497 | 52.52% | 47.48% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 34.63% | 65.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715575545 | A->G | INTERGENIC | None |