Detailed information of SNP:
|
SNP ID:
sf0715639466(Gbrowse)
Chromosome: chr07 Position: 15639466 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 59.63% | 40.37% |
| All Indica | 776 | 96.01% | 3.99% |
| All Japonica | 494 | 1.21% | 98.79% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 188 | 87.77% | 12.23% |
| Temperate Japonica | 332 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715639466 | G->A | INTERGENIC | None |