Detailed information of SNP:
|
SNP ID:
sf0715643983(Gbrowse)
Chromosome: chr07 Position: 15643983 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 51.45% | 48.55% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715643983 | T->C | LOC_Os07g27010(LOC_Os07g27010.1) | INTRON |