Detailed information of SNP:
|
SNP ID:
sf0715649904(Gbrowse)
Chromosome: chr07 Position: 15649904 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 53.48% | 46.52% |
| All Indica | 788 | 90.36% | 9.64% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 206 | 68.93% | 31.07% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715649904 | T->C | LOC_Os07g27014(LOC_Os07g27014.1) | INTRON |