Detailed information of SNP:
|
SNP ID:
sf0715664441(Gbrowse)
Chromosome: chr07 Position: 15664441 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 52.29% | 47.71% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715664441 | G->A | LOC_Os07g27040(LOC_Os07g27040.1) | Synonymous |