Detailed information of SNP:
|
SNP ID:
sf0715668220(Gbrowse)
Chromosome: chr07 Position: 15668220 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.83% | 19.17% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 63.38% | 36.62% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715668220 | G->T | INTERGENIC | None |