Detailed information of SNP:
|
SNP ID:
sf0715681879(Gbrowse)
Chromosome: chr07 Position: 15681879 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715681879 | C->T | INTERGENIC | None |