Detailed information of SNP:
|
SNP ID:
sf0715688718(Gbrowse)
Chromosome: chr07 Position: 15688718 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.27% | 45.73% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715688718 | T->C | LOC_Os07g27070(LOC_Os07g27070.1) | Synonymous |