Detailed information of SNP:
|
SNP ID:
sf0715689963(Gbrowse)
Chromosome: chr07 Position: 15689963 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 61.79% | 38.21% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715689963 | G->A | LOC_Os07g27070(LOC_Os07g27070.1) | Synonymous |