Detailed information of SNP:
|
SNP ID:
sf0715700958(Gbrowse)
Chromosome: chr07 Position: 15700958 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 77.20% | 22.80% |
| All Indica | 765 | 88.37% | 11.63% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 366 | 84.97% | 15.03% |
| Indica II | 204 | 94.61% | 5.39% |
| Indica Intermediate | 195 | 88.21% | 11.79% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715700958 | A->G | INTERGENIC | None |