Detailed information of SNP:
|
SNP ID:
sf0715702959(Gbrowse)
Chromosome: chr07 Position: 15702959 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.23% | 44.77% |
| All Indica | 796 | 88.44% | 11.56% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715702959 | T->C | INTERGENIC | None |