Detailed information of SNP:
|
SNP ID:
sf0715705135(Gbrowse)
Chromosome: chr07 Position: 15705135 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.54% | 44.46% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715705135 | C->T | INTERGENIC | None |