Detailed information of SNP:
|
SNP ID:
sf0715723674(Gbrowse)
Chromosome: chr07 Position: 15723674 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 50.22% | 49.78% |
| All Indica | 745 | 81.74% | 18.26% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 341 | 83.87% | 16.13% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 196 | 68.37% | 31.63% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715723674 | A->G | INTERGENIC | None |