Detailed information of SNP:
|
SNP ID:
sf0715762930(Gbrowse)
Chromosome: chr07 Position: 15762930 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 57.50% | 42.50% |
| All Indica | 797 | 85.82% | 14.18% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715762930 | C->T | LOC_Os07g27170(LOC_Os07g27170.1) | Non-Synonymous SNP |