Detailed information of SNP:
|
SNP ID:
sf0715765908(Gbrowse)
Chromosome: chr07 Position: 15765908 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 97.62% | 2.38% |
| All Indica | 772 | 95.85% | 4.15% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 362 | 94.48% | 5.52% |
| Indica II | 200 | 98.00% | 2.00% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715765908 | T->C | INTERGENIC | None |