Detailed information of SNP:
|
SNP ID:
sf0715800695(Gbrowse)
Chromosome: chr07 Position: 15800695 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 76.92% | 23.08% |
| All Indica | 778 | 89.20% | 10.80% |
| All Japonica | 497 | 60.36% | 39.64% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 371 | 86.79% | 13.21% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 197 | 86.29% | 13.71% |
| Temperate Japonica | 335 | 44.48% | 55.52% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715800695 | T->C | INTERGENIC | None |