Detailed information of SNP:
|
SNP ID:
sf0715809103(Gbrowse)
Chromosome: chr07 Position: 15809103 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1277 | 54.97% | 45.03% |
| All Indica | 683 | 88.58% | 11.42% |
| All Japonica | 479 | 7.10% | 92.90% |
| Aus | 59 | 67.80% | 32.20% |
| Indica I | 308 | 89.29% | 10.71% |
| Indica II | 183 | 91.80% | 8.20% |
| Indica Intermediate | 192 | 84.38% | 15.62% |
| Temperate Japonica | 317 | 9.78% | 90.22% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715809103 | T->C | LOC_Os07g27200(LOC_Os07g27200.1) | Synonymous |