Detailed information of SNP:
|
SNP ID:
sf0715816411(Gbrowse)
Chromosome: chr07 Position: 15816411 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 52.40% | 47.60% |
| All Indica | 776 | 84.92% | 15.08% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 367 | 88.28% | 11.72% |
| Indica II | 206 | 89.81% | 10.19% |
| Indica Intermediate | 203 | 73.89% | 26.11% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715816411 | G->A | LOC_Os07g27220(LOC_Os07g27220.1) | INTRON |