Detailed information of SNP:



SNP ID: sf0715822198(Gbrowse)

Chromosome: chr07

Position: 15822198
Major allele: C

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1419 85.84% 14.16%
All Indica799 99.50% 0.50%
All Japonica497 60.76% 39.24%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica335 44.48% 55.52%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0715822198 A->C LOC_Os07g27230(LOC_Os07g27230.1) Non-Synonymous SNP