Detailed information of SNP:
|
SNP ID:
sf0715823298(Gbrowse)
Chromosome: chr07 Position: 15823298 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 63.68% | 36.32% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 10.87% | 89.13% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715823298 | C->A | LOC_Os07g27230(LOC_Os07g27230.1) | Non-Synonymous SNP |