Detailed information of SNP:
|
SNP ID:
sf0715829238(Gbrowse)
Chromosome: chr07 Position: 15829238 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 59.30% | 40.70% |
| All Indica | 787 | 90.09% | 9.91% |
| All Japonica | 495 | 10.91% | 89.09% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 369 | 93.50% | 6.50% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 333 | 14.41% | 85.59% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715829238 | A->G | INTERGENIC | None |