Detailed information of SNP:
|
SNP ID:
sf0715842146(Gbrowse)
Chromosome: chr07 Position: 15842146 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.27% | 39.73% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715842146 | A->G | INTERGENIC | None |