Detailed information of SNP:
|
SNP ID:
sf0715842166(Gbrowse)
Chromosome: chr07 Position: 15842166 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 60.08% | 39.92% |
| All Indica | 795 | 90.69% | 9.31% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715842166 | C->T | INTERGENIC | None |