Detailed information of SNP:
|
SNP ID:
sf0715845954(Gbrowse)
Chromosome: chr07 Position: 15845954 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 62.73% | 37.27% |
| All Indica | 769 | 95.97% | 4.03% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 362 | 98.62% | 1.38% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 205 | 89.27% | 10.73% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715845954 | G->A | INTERGENIC | None |