Detailed information of SNP:
|
SNP ID:
sf0715848546(Gbrowse)
Chromosome: chr07 Position: 15848546 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 67.81% | 32.19% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 479 | 18.16% | 81.84% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 323 | 24.15% | 75.85% |
| Tropical Japonica | 90 | 2.22% | 97.78% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715848546 | G->A | LOC_Os07g27269(LOC_Os07g27269.1) | INTRON |