Detailed information of SNP:
|
SNP ID:
sf0715856913(Gbrowse)
Chromosome: chr07 Position: 15856913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.38% | 35.62% |
| All Indica | 796 | 38.32% | 61.68% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 40.91% | 59.09% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 209 | 55.50% | 44.50% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715856913 | G->A | INTERGENIC | None |