Detailed information of SNP:
|
SNP ID:
sf0715858846(Gbrowse)
Chromosome: chr07 Position: 15858846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.08% | 41.92% |
| All Indica | 798 | 27.82% | 72.18% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 22.40% | 77.60% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715858846 | G->A | INTERGENIC | None |