Detailed information of SNP:
|
SNP ID:
sf0715859274(Gbrowse)
Chromosome: chr07 Position: 15859274 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 56.01% | 43.99% |
| All Indica | 786 | 23.79% | 76.21% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 368 | 16.85% | 83.15% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 205 | 45.85% | 54.15% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715859274 | C->T | LOC_Os07g27290(LOC_Os07g27290.1) | SNPs that introduce stop codons |