Detailed information of SNP:
|
SNP ID:
sf0715866398(Gbrowse)
Chromosome: chr07 Position: 15866398 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 98.34% | 1.66% |
| All Indica | 793 | 100.00% | 0.00% |
| All Japonica | 473 | 95.35% | 4.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 94.32% | 5.68% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715866398 | C->T | INTERGENIC | None |