Detailed information of SNP:
|
SNP ID:
sf0715891835(Gbrowse)
Chromosome: chr07 Position: 15891835 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 87.50% | 12.50% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 479 | 65.34% | 34.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 318 | 50.94% | 49.06% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715891835 | T->C | INTERGENIC | None |