Detailed information of SNP:
|
SNP ID:
sf0715892642(Gbrowse)
Chromosome: chr07 Position: 15892642 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 53.92% | 46.08% |
| All Indica | 788 | 86.17% | 13.83% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 366 | 89.34% | 10.66% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715892642 | G->A | INTERGENIC | None |