Detailed information of SNP:
|
SNP ID:
sf0715902372(Gbrowse)
Chromosome: chr07 Position: 15902372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 51.18% | 48.82% |
| All Indica | 777 | 88.16% | 11.84% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 361 | 93.35% | 6.65% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 209 | 73.21% | 26.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715902372 | C->T | INTERGENIC | None |