Detailed information of SNP:
|
SNP ID:
sf0715906841(Gbrowse)
Chromosome: chr07 Position: 15906841 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.52% | 43.48% |
| All Indica | 799 | 24.91% | 75.09% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 17.07% | 82.93% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715906841 | C->A | LOC_Os07g27340(LOC_Os07g27340.1) | Non-Synonymous SNP |