Detailed information of SNP:
|
SNP ID:
sf0715938847(Gbrowse)
Chromosome: chr07 Position: 15938847 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 68.98% | 31.02% |
| All Indica | 767 | 45.50% | 54.50% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 359 | 47.08% | 52.92% |
| Indica II | 208 | 31.73% | 68.27% |
| Indica Intermediate | 200 | 57.00% | 43.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715938847 | T->C | LOC_Os07g27390(LOC_Os07g27390.4) | INTRON |
| sf0715938847 | T->C | LOC_Os07g27390(LOC_Os07g27390.1) | UTR_5_PRIME |
| sf0715938847 | T->C | LOC_Os07g27390(LOC_Os07g27390.5) | INTRON |
| sf0715938847 | T->C | LOC_Os07g27390(LOC_Os07g27390.3) | INTRON |