Detailed information of SNP:
|
SNP ID:
sf0715948895(Gbrowse)
Chromosome: chr07 Position: 15948895 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.18% | 40.82% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715948895 | T->A | INTERGENIC | None |