Detailed information of SNP:
|
SNP ID:
sf0715952648(Gbrowse)
Chromosome: chr07 Position: 15952648 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.72% | 40.28% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715952648 | C->A | INTERGENIC | None |