Detailed information of SNP:
|
SNP ID:
sf0715957332(Gbrowse)
Chromosome: chr07 Position: 15957332 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 64.73% | 35.27% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 18.21% | 81.79% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715957332 | C->G | INTERGENIC | None |