Detailed information of SNP:
|
SNP ID:
sf0715963920(Gbrowse)
Chromosome: chr07 Position: 15963920 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 797 | 93.60% | 6.40% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715963920 | G->C | INTERGENIC | None |